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Publicações desde 2014:
2023 
da Costa Lima Moraes, A., Mollinari, M., Ferreira, R. C. U., Aono, A., de Castro Lara, L. A., Pessoa-Filho, M., ... & Vigna, B. B. Z. (2023). Advances in genomic characterization of Urochloa humidicola: exploring polyploid inheritance and apomixis. Theoretical and Applied Genetics, 136(11), 238.
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Pimenta, R. J. G., Aono, A. H., Burbano, R. C. V., da Silva, M. F., dos Anjos, I. A., de Andrade Landell, M. G., ... & de Souza, A. P. (2023). Multiomic investigation of sugarcane mosaic virus resistance in sugarcane. The Crop Journal.
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Rosolen, R. R., Horta, M. A. C., de Azevedo, P. H. C., da Silva, C. C., Sforca, D. A., Goldman, G. H., & de Souza, A. P. (2023). Whole-genome sequencing and comparative genomic analysis of potential biotechnological strains of Trichoderma harzianum, Trichoderma atroviride, and Trichoderma reesei. Molecular Genetics and Genomics, 298(3), 735-754.
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de Oliveira, G. L., Niederauer, G. F., de Oliveira, F. A., Rodrigues, C. S., Hernandes, J. L., de Souza, A. P., & Moura, M. F. (2023). Genetic diversity, population structure and parentage analysis of Brazilian grapevine hybrids after half a century of genetic breeding. Scientia Horticulturae, 311, 111825.
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Santos, L. B. D., Aono, A. H., Francisco, F. R., da Silva, C. C., Souza, L. M., & Souza, A. P. D. (2023). The rubber tree kinome: Genome-wide characterization and insights into coexpression patterns associated with abiotic stress responses. Frontiers in Plant Science, 14, 1068202.
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2022
Aono, A. H., Francisco, F. R., Souza, L. M., Gonçalves, P. D. S., Scaloppi Junior, E. J., Le Guen, V., ... & De Souza, A. P. (2022). A divide-and-conquer approach for genomic prediction in rubber tree using machine learning. Scientific Reports, 12(1), 18023.
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Aono, A. H., Ferreira, R. C. U., Moraes, A. D. C. L., Lara, L. A. D. C., Pimenta, R. J. G., Costa, E. A., ... & de Souza, A. P. (2022). A joint learning approach for genomic prediction in polyploid grasses. Scientific reports, 12(1), 12499.
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Cardoso-Silva, C. B., Aono, A. H., Mancini, M. C., Sforça, D. A., da Silva, C. C., Pinto, L. R., ... & de Souza, A. P. (2022). Taxonomically restricted genes are associated with responses to biotic and abiotic stresses in Sugarcane (Saccharum spp.). Frontiers in plant science, 13, 923069.
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de Deus Vidal Junior, J., Mori, G. M., Cruz, M. V., da Silva, M. F., de Moura, Y. A., & de Souza, A. P. (2022). Differential Adaptive Potential and Vulnerability to Climate-Driven Habitat Loss in Brazilian Mangroves. Frontiers in Conservation Science, 3, 763325.
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Rosolen, R. R., Aono, A. H., Almeida, D. A., Ferreira Filho, J. A., Horta, M. A. C., & De Souza, A. P. (2022). Network analysis reveals different cellulose degradation strategies across Trichoderma harzianum strains associated with XYR1 and CRE1. Frontiers in genetics, 13, 807243.
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Alves-Pereira, A., Zucchi, M. I., Clement, C. R., Viana, J. P. G., Pinheiro, J. B., Veasey, E. A., & de Souza, A. P. (2022). Selective signatures and high genome-wide diversity in traditional Brazilian manioc (Manihot esculenta Crantz) varieties. Scientific Reports, 12(1), 1268.
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Francisco, F. R., Aono, A. H., Da Silva, C. C., Gonçalves, P. S., Scaloppi Junior, E. J., Le Guen, V., ... & Souza, A. P. D. (2021). Unravelling rubber tree growth by integrating GWAS and biological network-based approaches. Frontiers in Plant Science, 12, 768589.
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Ferreira, R. C. U., Costa Lima Moraes, A. D., Chiari, L., Simeão, R. M., Vigna, B. B. Z., & de Souza, A. P. (2021). An overview of the genetics and genomics of the Urochloa species most commonly used in pastures. Frontiers in Plant Science, 12, 770461.
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Filho, J. A. F., Rosolen, R. R., Almeida, D. A., de Azevedo, P. H. C., Motta, M. L. L., Aono, A. H., ... & de Souza, A. P. (2021). Trends in biological data integration for the selection of enzymes and transcription factors related to cellulose and hemicellulose degradation in fungi. 3 Biotech, 11, 1-18.
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2021
Martins FB, Moraes ACL, Aono AH, Ferreira RCU, Chiari L, Simeão RM, Barrios SCL, Santos MF, Jank L, do Valle CB, Vigna BBZ and de Souza AP (2021) A Semi-Automated SNP-Based Approach for Contaminant Identification in Biparental Polyploid Populations of Tropical Forage Grasses. Front. Plant Sci. 12:737919.
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Pimenta, R. J. G., Aono, A. H., Burbano, R. C. V., Coutinho, A. E., da Silva, C. C., Dos Anjos, I. A., ... & de Souza, A. P. (2021). Genome-wide approaches for the identification of markers and genes associated with sugarcane yellow leaf virus resistance. Scientific Reports, 11(1), 1-18.
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Almeida, D. A., Horta, M. A. C., Ferreira Filho, J. A., Murad, N. F., & de Souza, A. P. (2021). The synergistic actions of hydrolytic genes reveal the mechanism of Trichoderma harzianum for cellulose degradation. Journal of Biotechnology, 334, 1-10.
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Motta, M. L. L., Ferreira Filho, J. A., de Melo, R. R., Zanphorlin, L. M., Dos Santos, C. A., & de Souza, A. P. (2021). A novel fungal metal-dependent α-l-arabinofuranosidase of family 54 glycoside hydrolase shows expanded substrate specificity. Scientific reports, 11(1), 1-10.
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Da Silva, M. F., Cruz, M. V., Vidal Júnior, J. D. D., Zucchi, M. I., Mori, G. M., & De Souza, A. P. (2021). Geographical and environmental contributions to genomic divergence in mangrove forests. Biological Journal of the Linnean Society, 132(3), 573-589.
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Aono AH, Pimenta RJG, Garcia ALB, Correr FH, Hosaka GK, Carrasco MM, Cardoso-Silva CB, Mancini MC, Sforça DA, dos Santos LB, Nagai JS, Pinto LR, Landell MGdA, Carneiro MS, Balsalobre TW, Quiles MG, Pereira WA, Margarido GRA and de Souza AP (2021). The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns. Front. Plant Sci. 12:668623.
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2020
Ferreira Filho, J. A., Horta, M. A. C., Dos Santos, C. A., Almeida, D. A., Murad, N. F., Mendes, J. S., ... & de Souza, A. P. (2020). Integrative genomic analysis of the bioprospection of regulators and accessory enzymes associated with cellulose degradation in a filamentous fungus (Trichoderma harzianum). BMC genomics, 21(1), 1-14.
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Aono, A. H., Costa, E. A., Rody, H. V. S., Nagai, J. S., Pimenta, R. J. G., Mancini, M. C., ... de Souza, A. P., & Kuroshu, R. M. (2020). Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance. Scientific reports, 10(1), 1-16.
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de Oliveira, G. L., de Souza, A. P., de Oliveira, F. A., Zucchi, M. I., de Souza, L. M., & Moura, M. F. (2020). Genetic structure and molecular diversity of Brazilian grapevine germplasm: Management and use in breeding programs. PloS one, 15(10), e0240665.
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de Oliveira, F. A., Vigna, B. B., da Silva, C. C., Fávero, A. P., de Matta, F. P., Azevedo, A. L., & de Souza, A. P. (2020). Coexpression and Transcriptome analyses identify active Apomixis-related genes in Paspalum notatum leaves. BMC genomics, 21(1), 78.
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Deo, T. G., Ferreira, R. C., Lara, L. A., Moraes, A. C., Alves-Pereira, A., de Oliveira, F. A., ... & de Souza, A. P. (2020). High-resolution linkage map with allele dosage allows the identification of regions governing complex traits and apospory in guinea grass (Megathyrsus maximus). Frontiers in Plant Science, 11, 15.
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Cruz, M. V., Mori, G. M., Oh, D. H., Dassanayake, M., Zucchi, M. I., Oliveira, R. S., & Souza, A. P. D. (2020). Molecular responses to freshwater limitation in the mangrove tree Avicennia germinans (Acanthaceae). Molecular ecology, 29(2), 344-362.
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2019
Cruz, M. V., Mori, G. M., Signori-Müller, C., da Silva, C. C., Oh, D. H., Dassanayake, M., ... & de Souza, A. P. (2019). Local adaptation of a dominant coastal tree to freshwater availability and solar radiation suggested by genomic and ecophysiological approaches. Scientific reports, 9(1), 1-15.
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Santos, C. A., Morais, M. A., Terrett, O. M., Lyczakowski, J. J., Zanphorlin, L. M., Ferreira-Filho, J. A., ... & Souza, A. P. (2019). An engineered GH1 β-glucosidase displays enhanced glucose tolerance and increased sugar release from lignocellulosic materials. Scientific reports, 9(1), 4903.
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Cortez, M. B. D. S., Sforça, D. A., Alves, F. D. M., Vidal, J. D. D., Alves-Pereira, A., Mori, G. M., ... & Souza, A. P. (2019). Elucidating the Clusia criuva species ‘complex’: cryptic taxa can exhibit great genetic and geographical variation. Botanical Journal of the Linnean Society, 190(1), 67-82.
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Sforça, D. A., Vautrin, S., Cardoso-Silva, C. B., Mancini, M. C., Cruz, M. V. R. D., Pereira, G. S., ... & Souza, A. P. (2019). Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions. Frontiers in plant science, 10, 553.
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Ferreira, R. C. U., Lara, L. A. D. C., Chiari, L., Barrios, S. C. L., do Valle, C. B., Valerio, J. R., ... & de Souza, A. P. (2019). Genetic mapping with allele dosage information in tetraploid Urochloa decumbens (Stapf) RD Webster reveals insights into spittlebug (Notozulia entreriana Berg) resistance. Frontiers in plant science, 10, 92.
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Mantello, C. C., Boatwright, L., da Silva, C. C., Scaloppi, E. J., de Souza Goncalves, P., Barbazuk, W. B., & Souza, A. P. (2019). Deep expression analysis reveals distinct cold-response strategies in rubber tree (Hevea brasiliensis). BMC genomics, 20(1), 455.
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Souza, L. M. D., Francisco, F. R., Gonçalves, P. D. S., Scaloppi-Junior, E. J. J., Le Guen, V., Fritsche-Neto, R., & Souza, A. P. (2019). Genomic selection in rubber tree breeding: A comparison of models and methods for managing G× E interactions. Frontiers in plant science, 10, 1353.
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2018
Horta, M. A. C., Ferreira Filho, J. A., Murad, N. F., Santos, E., Santos, C. A., Mendes, J. S., ... & Souza, A. P. (2018). Network of proteins, enzymes and genes linked to biomass degradation shared by Trichoderma species. Scientific reports, 8(1), 1341.
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Francisco, P. M., Mori, G. M., Alves, F. M., Tambarussi, E. V., & de Souza, A. P. (2018). Population genetic structure, introgression, and hybridization in the genus Rhizophora along the Brazilian coast. Ecology and evolution, 8(6), 3491-3504.
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Mancini, M. C., Cardoso-Silva, C. B., Sforça, D. A., & Souza, A. P. (2018). “Targeted Sequencing by Gene Synteny,” a New Strategy for Polyploid Species: Sequencing and Physical Structure of a Complex Sugarcane Region. Frontiers in plant science, 9, 397.
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Santos, C. A., & Souza, A. P. (2018). Solubilization, Folding, and Purification of a Recombinant Peptidoglycan‐Associated Lipoprotein (PAL) Expressed in Escherichia coli. Current Protocols in Protein Science, 92(1), e53.
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Conson, A. R. O., Hayumi Taniguti, C., Rampazo Amadeu, R., Aparecida Araújo Andreotti, I., Moura de Souza, L., Henrique Braz dos Santos, L., ... & Souza, A. P. (2018). High-resolution genetic map and QTL analysis of growth-related traits of Hevea brasiliensis cultivated under suboptimal temperature and humidity conditions. Frontiers in plant science, 9, 1255.
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Alves, F. M., Sartori, Â. L., Zucchi, M. I., Azevedo-Tozzi, A. M., Tambarussi, E. V., & Souza, A. P. (2018). A high level of outcrossing in the vulnerable species Prosopis rubriflora in a Chaco remnant. Australian Journal of Botany, 66(4), 360-368.
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Bajay, S. K., Cruz, M. V., da Silva, C. C., Murad, N. F., Brandão, M. M., & Souza, A. P. (2018). Extremophiles as a Model of a Natural Ecosystem: Transcriptional Coordination of Genes Reveals Distinct Selective Responses of Plants Under Climate Change Scenarios. Frontiers in Plant Science, 9.
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Alves, F. M., Sartori, Â. L., Zucchi, M. I., Azevedo‐Tozzi, A. M., Tambarussi, E. V., Alves‐Pereira, A., & Souza, A. P. (2018). Genetic structure of two Prosopis species in Chaco areas: A lack of allelic diversity diagnosis and insights into the allelic conservation of the affected species. Ecology and Evolution.
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Souza, L. M., dos Santos, L. H., Rosa, J. R., da Silva, C. C., Mantello, C. C., Conson, A. R., ... & Souza, A. P. (2018). Linkage disequilibrium and population structure in wild and cultivated populations of rubber tree (Hevea brasiliensis). Frontiers in plant science, 9, 815.
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Durigan, M., Cardoso-Silva, C. B., Ciampi-Guillardi, M., Toledo-Silva, G., Mori, G. M., Franco, R. M., & Souza, A. P. (2018). Molecular genotyping, diversity studies and high-resolution molecular markers unveiled by microsatellites in Giardia duodenalis. PLoS neglected tropical diseases, 12(11).
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Barreto, M. A., Rosa, J. R. B. F., Holanda, I. S. A., Cardoso-Silva, C. B., Vildoso, C. I. A., Ahnert, D., ... & Souza, A. P. (2018). QTL mapping and identification of corresponding genomic regions for black pod disease resistance to three Phytophthora species in Theobroma cacao L. Euphytica, 214(10), 188.
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Francisco, P. M., Tambarussi, E. V., Alves, F. D. M., Bajay, S., Ciampi-Guillardi, M., & Souza, A. P. (2018). GENETIC DIVERSITY AND MATING SYSTEM OF Rhizophora mangle L.(RHIZOPHORACEAE) IN NORTHERN BRAZIL REVEALED BY MICROSATELLITE ANALYSIS. CERNE, 24(4), 295-302.
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2017
Santos, C. A., Ferreira-Filho, J. A., O’Donovan, A., Gupta, V. K., Tuohy, M. G., & Souza, A. P. (2017). Production of a recombinant swollenin from Trichoderma harzianum in Escherichia coli and its potential synergistic role in biomass degradation. Microbial cell factories, 16(1), 83.
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Durigan, M., Ciampi‐Guillardi, M., Rodrigues, R. C., Greinert‐Goulart, J. A., Siqueira‐Castro, I. C., Leal, D. A., ... & Souza, A. P. (2017). Population genetic analysis of Giardia duodenalis: genetic diversity and haplotype sharing between clinical and environmental sources. Microbiologyopen, 6(2), e00424.
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Ferreira Filho, J. A., Horta, M. A. C., Beloti, L. L., dos Santos, C. A., & Souza, A. P. (2017). Carbohydrate-active enzymes in Trichoderma harzianum: a bioinformatic analysis bioprospecting for key enzymes for the biofuels industry. BMC genomics, 18(1), 779.
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2016
Ferreira, R. C., Cançado, L. J., Valle, C. B., Chiari, L., & Souza, A. P. (2016). Microsatellite loci for Urochloa decumbens (Stapf) RD Webster and cross-amplification in other Urochloa species. BMC research notes, 9(1), 152.
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Santos, C. A., Zanphorlin, L. M., Crucello, A., Tonoli, C. C., Ruller, R., Horta, M. A., ... & Souza, A. P. (2016). Crystal structure and biochemical characterization of the recombinant ThBgl, a GH1 β-glucosidase overexpressed in Trichoderma harzianum under biomass degradation conditions. Biotechnology for biofuels, 9(1), 71.
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Vigna, B. B., Santos, J. C., Jungmann, L., do Valle, C. B., Mollinari, M., Pastina, M. M., ... & Souza, A. P. (2016). Evidence of allopolyploidy in Urochloa humidicola based on cytological analysis and genetic linkage mapping. PloS one, 11(4), e0153764.
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Costa, E. A., Anoni, C. O., Mancini, M. C., Santos, F. R. C., Marconi, T. G., Gazaffi, R., Pinto, L. R., Souza, A. P., Garcia, A. A. F. (2016). QTL mapping including codominant SNP markers with ploidy level information in a sugarcane progeny. Euphytica, 211(1), 1-16.
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Souza, L. M., Toledo-Silva, G., Cardoso-Silva, C. B., Da Silva, C. C., de Araujo Andreotti, I. A., Conson, A. R. O., ... & Souza, A. P. (2016). Development of single nucleotide polymorphism markers in the large and complex rubber tree genome using next-generation sequence data. Molecular breeding, 36(8), 115.
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Vigna, B. B. Z., de Oliveira, F. A., de Toledo-Silva, G., da Silva, C. C., do Valle, C. B., & Souza, A. P. (2016). Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas. BMC genomics, 17(1), 910.
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Oliveira, F. A., Cidade, F. W., Fávero, A. P., Vigna, B. B., & Souza, A. P. (2016). First microsatellite markers for Paspalum plicatulum (Poaceae) characterization and cross-amplification in different Paspalum species of the Plicatula group. BMC research notes, 9(1), 511.
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Santiago, A. D. S., Mendes, J. S., Santos, C. A. D., de Toledo, M. A., Beloti, L. L., Crucello, A., ... & Souza, A. P. (2016). The antitoxin protein of a toxin-antitoxin system from Xylella fastidiosa is secreted via outer membrane vesicles. Frontiers in microbiology, 7, 2030.
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Mendes, J. S., Santiago, A. S., Toledo, M. A., Horta, M. A., de Souza, A. A., Tasic, L., & Souza, A. P. (2016). In vitro Determination of Extracellular Proteins from Xylella fastidiosa. Frontiers in microbiology, 7, 2090.
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2015
Crucello, A., Sforça, D. A., Horta, M. A. C., dos Santos, C. A., Viana, A. J. C., Beloti, L. L., ... & de Souza, A. P. (2015). Analysis of genomic regions of Trichoderma harzianum IOC-3844 related to biomass degradation. PloS one, 10(4), e0122122.
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Cerqueira-Silva, C. B. M., Jesus, O. N., Oliveira, E. J., Santos, E. S. L., & Souza, A. P. (2015). Characterization and selection of passion fruit (yellow and purple) accessions based on molecular markers and disease reactions for use in breeding programs. Euphytica, 202(3), 345-359.
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Santiago, A. S., Santos, C. A., Mendes, J. S., Toledo, M. A., Beloti, L. L., Souza, A. A., & Souza, A. P. (2015). Characterization of the LysR-type transcriptional regulator YcjZ-like from Xylella fastidiosa overexpressed in Escherichia coli. Protein expression and purification, 113, 72-78.
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Santos, C. A., Janissen, R., Toledo, M. A., Beloti, L. L., Azzoni, A. R., Cotta, M. A., & Souza, A. P. (2015). Characterization of the TolB–Pal trans-envelope complex from Xylella fastidiosa reveals a dynamic and coordinated protein expression profile during the biofilm development process. Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, 1854(10), 1372-1381.
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Barreto, M. A., Santos, J. C. S., Corrêa, R. X., Luz, E. D. M. N., Marelli, J., & Souza, A. P. (2015). Detection of genetic resistance to cocoa black pod disease caused by three Phytophthora species. Euphytica, 206(3), 677-687.
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Souza, L. M., Le Guen, V., Cerqueira-Silva, C. B. M., Silva, C. C., Mantello, C. C., Conson, A. R. O., ... & Souza, A. P. (2015). Genetic diversity strategy for the management and use of rubber genetic resources: more than 1,000 wild and cultivated accessions in a 100-genotype core collection. PloS one, 10(7), e0134607.
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Santos, E. S., Cerqueira-Silva, C. B. M., Mori, G. M., Ahnert, D., Mello, D. L., Pires, J. L., ... & Souza, A. P. (2015). Genetic structure and molecular diversity of cacao plants established as local varieties for more than two centuries: the genetic history of cacao plantations in Bahia, Brazil. PloS one, 10(12), e0145276.
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Santos, J. C., Barreto, M. A., Oliveira, F. A., Vigna, B. B., & Souza, A. P. (2015). Microsatellite markers for Urochloa humidicola (Poaceae) and their transferability to other Urochloa species. BMC Research notes, 8(1), 83.
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Mori, G. M., Zucchi, M. I., & Souza, A. P. (2015). Multiple-geographic-scale genetic structure of two mangrove tree species: the roles of mating system, hybridization, limited dispersal and extrinsic factors. PLoS One, 10(2), e0118710.
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Mori, G. M., Zucchi, M. I., Sampaio, I., & Souza, A. P. (2015). Species distribution and introgressive hybridization of two Avicennia species from the Western Hemisphere unveiled by phylogeographic patterns. BMC evolutionary biology, 15(1), 61.
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Mendes, J. S., Santiago, A. D. S., Toledo, M. A., Rosselli-Murai, L. K., Favaro, M. T., Santos, C. A., ... & Souza, A. P. (2015). VapD in Xylella fastidiosa is a thermostable protein with ribonuclease activity. PloS one, 10(12), e0145765.
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2014
Cardoso-Silva, C. B., Costa, E. A., Mancini, M. C., Balsalobre, T. W. A., Canesin, L. E. C., Pinto, L. R., ..., Souza, A. P., & Vicentini, R. (2014). De novo assembly and transcriptome analysis of contrasting sugarcane varieties. PloS one, 9(2), e88462.
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Alves, F. M., Zucchi, M. I., Azevedo-Tozzi, A. M., Sartori, Â. L., & Souza, A. P. (2014). Characterization of microsatellite markers developed from Prosopis rubriflora and Prosopis ruscifolia (Leguminosae-Mimosoideae), legume species that are used as models for genetic diversity studies in Chaquenian areas under anthropization in South America. BMC Research Notes, 7(1), 375.
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Mantello, C. C., Cardoso-Silva, C. B., da Silva, C. C., de Souza, L. M., Junior, E. J. S., de Souza Gonçalves, P., ... & Souza, A. P. (2014). De novo assembly and transcriptome analysis of the rubber tree (Hevea brasiliensis) and SNP markers development for rubber biosynthesis pathways. PloS one, 9(7), e102665.
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Cerqueira-Silva, C. B. M., Jesus, O. N., Santos, E. S., Corrêa, R. X., & Souza, A. P. (2014). Genetic breeding and diversity of the genus Passiflora: progress and perspectives in molecular and genetic studies. International Journal of Molecular Sciences, 15(8), 14122-14152.
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Durigan, M., Abreu, A. G., Zucchi, M. I., Franco, R. M. B., & de Souza, A. P. (2014). Genetic diversity of Giardia duodenalis: multilocus genotyping reveals zoonotic potential between clinical and environmental sources in a metropolitan region of Brazil. PloS one, 9(12), e115489.
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Silva, C. C., Mantello, C. C., Campos, T., Souza, L. M., Gonçalves, P. S., & Souza, A. P. (2014). Leaf-, panel-and latex-expressed sequenced tags from the rubber tree (Hevea brasiliensis) under cold-stressed and suboptimal growing conditions: the development of gene-targeted functional markers for stress response. Molecular breeding, 34(3), 1035-1053.
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Cerqueira-Silva, C., Santos, E., Jesus, O., Vieira, J., Mori, G., Corrêa, R., & Souza, A. (2014). Molecular genetic variability of commercial and wild accessions of passion fruit (Passiflora spp.) targeting ex situ conservation and breeding. International journal of molecular sciences, 15(12), 22933-22959.
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Cerqueira‐Silva, C. B., Santos, E. S., Vieira, J. G., Mori, G. M., Jesus, O. N., Corrêa, R. X., & Souza, A. P. (2014). New microsatellite markers for wild and commercial species of Passiflora (Passifloraceae) and cross‐amplification. Applications in plant sciences, 2(2), 1300061.
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Horta, M. A. C., Vicentini, R., da Silva Delabona, P., Laborda, P., Crucello, A., Freitas, S., ... & Souza, A. P. (2014). Transcriptome profile of Trichoderma harzianum IOC-3844 induced by sugarcane bagasse. PloS one, 9(2), e88689.
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Capitulos de Livro
Horta, M. A. C., Pimenta, R. J. G., Almeida, D. A., Rosolen, R. R., Aono, A. H., Jaire Filho, F., ... & de Souza, A. P. (2023). Transcriptomic analysis of genes: expression and regulation. In Transcriptome Profiling (pp. 1-41). Academic Press. https://doi.org/10.1016/B978-0-323-91810-7.00017-0
Bajay, S. K., Ferreira, R. C. U., Pimenta, R. J. G., Mancini, M., Aono, A. H., Niederauer, G. F., ... & de Souza, A. P. (2023). Transcriptomics in agricultural sciences: capturing changes in gene regulation during abiotic or biotic stress. In Transcriptome Profiling (pp. 257-283). Academic Press. https://doi.org/10.1016/B978-0-323-91810-7.00004-2
da Costa Lima Moraes, A., Sforça, D.A., Mancini, M.C., Vigna, B.B.Z., de Souza, A.P. (2023). Polyploid SNP Genotyping Using the MassARRAY System. In: Shavrukov, Y. (eds) Plant Genotyping. Methods in Molecular Biology, vol 2638. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3024-2_7
Mancini, M. C., Sforça, D. A., Pimenta, R. J. G., Cardoso-Silva, C. B., Aono, A. H., da Silva, C. C., & de Souza, A. P. (2022). Omics in sugarcane. In Omics in Horticultural Crops (pp. 449-465). Academic Press. https://doi.org/10.1016/B978-0-323-89905-5.00017-3
Cerqueira-Silva, C. B. M., Faleiro, F. G., de Jesus, O. N., dos Santos, E. S. L., & de Souza, A. P. (2018). Passion Fruit (Passiflora spp.) Breeding. In Advances in Plant Breeding Strategies: Fruits (pp. 929-951). Springer, Cham.
Mancini, M. C., Cardoso-Silva, C. B., Costa, E. A., Marconi, T. G., Garcia, A. A. F., & De Souza, A. P. (2017). New Developments in Sugarcane Genetics and Genomics. In Advances of Basic Science for Second Generation Bioethanol from Sugarcane (pp. 159-174). Springer, Cham.
Cerqueira-Silva, C. B. M., Faleiro, F. G., de Jesus, O. N., dos Santos, E. S. L., & de Souza, A. P. (2016). The genetic diversity, conservation, and use of passion fruit (Passiflora spp.). In Genetic Diversity and Erosion in Plants (pp. 215-231). Springer, Cham.
